species:   Rhsol
pid:       PID0513
parent:    Rhi-milR-47
paralog:   
locus:     KB317849.1:11259-11372
matures:   ['CAUGGAUCCGUAGGUGUUGGCGC', 'GCCAAGCUACUGUGGAUCCGUAGCC']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317849.1:11259-11372

12 out of bounds
38 alignments
25 proper strand
23 stranded perfect matches

                   *************************   ***************************                                        
GUAUUGGGGAGAGAGGAAGGGCAUGGAUCCGUAGGUGUUGGCGCUAAGCGCCAAGCUACUGUGGAUCCGUAGCCCCCUGUCAAUACAAACAAGCAGUGCAACUGGACACCCAUU
....((((..((.(((..((((((((((((((((...(((((((...)))))))....)))))))))))).))))))).))............((((...))))....))))..
---------------------CAUGGAUCCGUAGGUGUUGGCGC---------------------------------------------------------------------- l=23 a=4 c
-------------------------------------------------GCCAAGCUACUGUGGAUCCGUAGCC---------------------------------------- l=25 a=0 c*
---------------------CAUGGAUCCGUAGGUGUUGGCGC---------------------------------------------------------------------- l=23 a=4 ma
-------------------------------------------------GCCAAGCUACUGUGGAUCCGUAGCC---------------------------------------- l=25 a=0 ma*

-UAUUGGGGAGAGAGGAAGGGCAUG----------------------------------------------------------------------------------------- l=24 a=1 
-UAUUGGGGAGAGAGGAAGGGCAUGG---------------------------------------------------------------------------------------- l=25 a=1 
---UUGGGGAGAGAGGAAGGGCAUGG---------------------------------------------------------------------------------------- l=23 a=3 
---UUGGGGAGAGAGGAAGGGCAUGGA--------------------------------------------------------------------------------------- l=24 a=3 
---------AGAGAGGAAGGGCAUGGAUCa------------------------------------------------------------------------------------ l=21 a=1 
-----------AGAGGAAGGGCAUGGAUCCGUAG-------------------------------------------------------------------------------- l=23 a=1 
----------------AAGGGCAUGGAUCCGUAGGUGU---------------------------------------------------------------------------- l=22 a=2 
----------------AAGGGCAUGGAUCCGUAGGUGUUG-------------------------------------------------------------------------- l=24 a=1 
--------------------GCAUGGAUCCGUAGGUGUUGGCGC---------------------------------------------------------------------- l=24 a=1 
---------------------CAUGGAUCCGUAGGUGUUGGCG----------------------------------------------------------------------- l=22 a=1 
---------------------CAUGGAUCCGUAGGUGUUGGCGC---------------------------------------------------------------------- l=23 a=4 (c,ma)
----------------------AUGGAUCCGUAGGUGUUGGC------------------------------------------------------------------------ l=20 a=1 
-----------------------UGGAUCCGUAGGUGUUGGC------------------------------------------------------------------------ l=19 a=1 
-----------------------UGGAUCCGUAGGUGUUGGCGu---------------------------------------------------------------------- l=21 a=1 
-----------------------UGGAUCCGUAGGUGUUGGCGC---------------------------------------------------------------------- l=21 a=1 
---------------------------------------------AAGCGCCAAGCUACUGUGGAUC----------------------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------CAAACAAGCAGUGCAACUGGACA------ l=23 a=1 

mb-01011
ax-1011011
ku-01
ss-111110111100
fn-101
